metabolomics software progenesis qi v2.3  (Nonlinear Dynamics)

Journal: Frontiers in Plant Science

Article Title: NO enhances the adaptability to high-salt environments by regulating osmotic balance, antioxidant defense, and ion homeostasis in eelgrass based on transcriptome and metabolome analysis

doi: 10.3389/fpls.2024.1343154

Figure Lengend Snippet: The metabolite analysis in eelgrass treated with Na 2 WO 4 . (A) PCA clustering based on metabolome data. Heat map of DAMs in roots (B) , stems (C) , and leaves (D) . PCA, principal component analysis; DAMs, differentially accumulated metabolites.

Article Snippet: Qualitative and relative quantification analyses of raw data were performed using the metabolome data processing software Progenesis QI v2.3 (Nonlinear Dynamics, Newcastle, UK), and standardization pre-processing of raw data was carried out.

Techniques:

Journal: Frontiers in Plant Science

Article Title: NO enhances the adaptability to high-salt environments by regulating osmotic balance, antioxidant defense, and ion homeostasis in eelgrass based on transcriptome and metabolome analysis

doi: 10.3389/fpls.2024.1343154

Figure Lengend Snippet: Validation of selected metabolites in different tissues. The contents of selected metabolites based on the metabolome data in roots (A) , stems (B) , and leaves (C) . The contents of selected metabolites based on the experimental data in roots (D) , stems (E) , and leaves (F) . The error bars represent the standard deviations from three replicates. The asterisk indicates a significant difference ( p < 0.05).

Article Snippet: Qualitative and relative quantification analyses of raw data were performed using the metabolome data processing software Progenesis QI v2.3 (Nonlinear Dynamics, Newcastle, UK), and standardization pre-processing of raw data was carried out.

Techniques: Biomarker Discovery

Journal: Frontiers in Plant Science

Article Title: NO enhances the adaptability to high-salt environments by regulating osmotic balance, antioxidant defense, and ion homeostasis in eelgrass based on transcriptome and metabolome analysis

doi: 10.3389/fpls.2024.1343154

Figure Lengend Snippet: KEGG co-enrichment analysis based on the transcriptome and metabolome data in roots (A) , stems (B) , and leaves (C) . Results of the correlation analysis between DEGs and metabolites in roots (D) , stems (E) , and leaves (F) . Positive correlations are indicated by an orange line, and negative correlations are indicated by a blue line. KEGG, Kyoto Encyclopedia of Genes and Genomes; DEGs, differentially expressed genes.

Article Snippet: Qualitative and relative quantification analyses of raw data were performed using the metabolome data processing software Progenesis QI v2.3 (Nonlinear Dynamics, Newcastle, UK), and standardization pre-processing of raw data was carried out.

Techniques: